An evolutionary & developmental biology lab

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Biotechnology at its best

Artificial jellyfish built from rat cells

7/27/12 WCB

Hey Everyone,

WCB will be held at 4:00PM-5:00PM Friday, July 27th.  The paper we will be discussing (Venken et al 2011) outlines the MIMIC lines a exciting new transgenic resource.  The link is below: http://www.nature.com/nmeth/journal/v8/n9/full/nmeth.1662.html

butterfly genome

Really interesting story coming out of the Heliconius genome:

Butterfly genome reveals promiscuous exchange of mimicry adaptations among species

 

Evolution of arthropod nervous system

A few months ago, we had a little seat-of-the-pants discussion of the (macro)evolution of CNS and sensory systems in arthropods.  If you want to follow up on that, here is a little review:

Evolving specialization of the arthropod nervous system

WCB club Friday 7/6

Hey everybody, the first summer meeting of the WCB club is this Friday, 4-5 pm.  Artyom will talk about the following paper:

Fluorescent fusion protein knockout mediated by anti-GFP nanobody

 

Homologous gene identification methods

As many in our lab know, identifying homologous/orthologous genes in sister species is tedious process that even with decades of research, still generates vast uncertainty, which in turn, confounds downstream analyses (and is a pain to be honest).

Here are two recent papers that try to address the issue:

Domain enhanced lookup time accelerated BLAST

Prediction of Protein Domain with mRMR Feature Selection and Analysis

Comparative studies of gene expression and the evolution of gene regulation

Another review in the last issue of NRG.  Mainly human/primate work.

“Focusing on work in primates, the authors discuss the evolution of gene expression, ways of exploring mechanisms that underlie expression changes and complementary work in model organisms on the functional effects of expression changes.”

Genomic approaches towards finding cis-regulatory modules in animals

A useful review in NRG. Includes an overview of different bioinformatic and experimental approaches, and a list of useful software and websites.

First birds, now fish – sexual dichromatism promotes species diversity

First there was a report of accelerated speciation in colour-polymorphic birds.  Now, a new paper from Ole Seehausen’s group finds a correlation between sexual dichromatism (a proxy for the intensity of sexual selection???) and the rate of species diversification in the famous African lake cichlids.

Recent Plachetzki Shout-outs

For some reason, everyone really likes Dave’s work on hydras. Here are the recent articles:

Hydra “see” the light – but they don’t have eyes

Blind hydra relies on light to kill prey

UC Davis College of Biological Sciences Alumni Newsletter

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